A beta-release of the AspectMatlab Compiler (amc) is freely available to download from
www.sable.mcgill.ca/mclab/aspectmatlab.
Once you have a copy of amc.jar, you can execute the jar directly with a list of standard MATLAB files along with AspectMatlab aspect files.
For example, one might run
java -jar amc.jar myFunc.m myAspect.m
The woven code generated by amc can be found in weaved directory in the current working directory, which can be executed by any MATLAB system.